We have
numerous projects where we work networks or graphs of various kinds, biological
ones in particular. Networks can be undirected, directed with or without signs,
discrete or continuous. For publications see google scholar (https://scholar.google.com/citations?hl=sv&user=_DUppAgAAAAJ&view_op=list_works&so rtby=pubdate).Challenges
and sub-projects include:
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How to compare
2 and several networks, review,
benchmark current methods, invent new efficient algorithms
for network comparison
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Analyze networks embedded in hyperbolic space
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Review, benchmark current methods for embedding networks into an ML framework
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Generative modeling of networks constrained by correlational
information from data-sets
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Partially overlapping networks,
analyze their putative
alignment, construction of multi-layer networks from several
partially overlapping graphs.
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Search and propagation in multi-layer networks
Alignment of several but
different real protein interaction networks